The report was generated using the JSEQ_scRNAseq single-cell analysis pipeline. For more information, please visit: https://github.com/jkubis96/JSEQ_scRNAseq


1 Analysis Configuration Parameters

Parameter Value
mt_per 25
scale_factor 1e+06
n_features 1500
c_res 0.5
heterogeneity var
mt_cssg FALSE
m_val 0.05
top_m 50
max_genes 1000
max_combine 1000
loss_val 0.05
s_factor 0.7
p_bin 0.1
drop TRUE
min_c 10

The parameters above were used during the current analysis.
If you need to apply different analysis conditions, modify the parameters in the configuration file.

Parameters description:

  • mt_per
    Maximum percentage of mitochondrial genes per cell.
    Default: 25%
  • down
    Lower threshold for the number of genes per cell.
    Default: NA (automatically computed if NA)
  • up
    Upper threshold for the number of genes per cell.
    Default: NA (automatically computed if NA)
  • scale_factor
    Scale factor used for data normalization.
  • n_features
    Number of variable features to detect for clustering.
  • c_res
    Clustering resolution — higher values produce more clusters.
  • heterogeneity
    Method for estimating cluster heterogeneity.
    Options: var (within-cluster variance), deg (deregulated gene profiles).
    Default: deg
  • mt_cssg
    Whether to include mitochondrial genes when creating subclasses and subtypes.
    Options: TRUE, FALSE.
    Default: FALSE
  • m_val
    Maximum p-value threshold for marker detection in advanced subtype analyses.
    Default: 0.05
  • top_m
    Maximum number of top markers used for naming clusters based on effect size metrics.
    Default: 50
  • max_genes
    Maximum number of input genes considered in cluster heterogeneity discovery.
    Default: 1000
  • max_combine
    Maximum number of initial combinations for each iteration during heterogeneity discovery.
    Default: 1000
  • loss_val
    Assigned value for potentially unclassified cells within a cluster.
  • s_factor
    Maximum split factor for gene occurrence in heterogeneity discovery (0.2–1).
    Default: 0.8
  • p_bin
    Minimum cell proportion required for population presence based on binomial test p-value.
    Default: 0.05
  • min_c
    Minimum cell proportion required for population presence as defined by the user (independent of binomial test).
    Default: 10
  • drop
    Boolean indicating whether to drop non-significant subtypes based on p_bin and min_c.
    Default: TRUE

The configuration file is available in the directory:
JSEQ_scRNAseq/requirements_file/config_file.conf

Additional configuration files for other analysis steps can also be found in:
JSEQ_scRNAseq/requirements_file

For more information, please visit:
https://github.com/jkubis96/JSEQ_scRNAseq



2 Cell content analysis

2.1 Read distribution across genomic features

2.2 Count (UMI) per barcode (cell)

2.3 Cell barcode knee plot

The above graph illustrates general trends and quality metrics at the initial stage of single-cell analysis; however, it does not represent the final number of detected cells.

2.4 Ratio of number of genes to counts

2.5 Number of genes and counts per cell

2.6 Percentage of ribosomal and mitochondrial genes [%]



3 Quality control of cell content

3.1 Genes per cell content & thresholds

3.2 Genes upper & lower thresholds per cell

3.3 Number of cells across different stages of analysis



4 Gene expression analysis across cells

4.1 Top highly variable genes in the dataset



5 Princilpe component selection

5.1 ElbowPlot - principal components cutoff

5.2 JackStrawPlot - PC significance



6 Cells clustering

6.1 UMAP clusters



7 Subclasses identification based on marker genes

7.1 PCA cisualization of subclasses

7.2 UMAP visualization of subclasses

7.3 Subclasses - cell composition


7.4 Subclasses markers - top 25


Top 25 merkers
genes pct_occurrence esm avg_logFC p_val cluster p_adj_bf p_adj_bh subclass
MATR3 0.2194093 0.3849063 1.4178012 0.0000000 0 0.0000057 0.0000057 STR FOXP1 CSMD1.VAR1
CANX 0.1413502 0.3609581 1.8726197 0.0000000 0 0.0000171 0.0000072 STR FOXP1 CSMD1.VAR1
DST.var1 0.0907173 0.3589909 2.8693035 0.0000000 0 0.0000215 0.0000072 STR FOXP1 CSMD1.VAR1
KIF5C 0.0738397 0.3556542 3.7122896 0.0000001 0 0.0000320 0.0000072 STR FOXP1 CSMD1.VAR1
MAP2 0.1033755 0.3505901 2.3849358 0.0000001 0 0.0000361 0.0000072 STR FOXP1 CSMD1.VAR1
MAP1B 0.2172996 0.3466433 1.2372553 0.0000002 0 0.0001252 0.0000209 STR FOXP1 CSMD1.VAR1
ANKRD17 0.0675105 0.3322849 3.5209018 0.0000003 0 0.0001564 0.0000223 STR FOXP1 CSMD1.VAR1
CSMD1.var1 0.2573840 0.3187272 0.9784395 0.0000047 0 0.0028361 0.0002182 STR FOXP1 CSMD1.VAR1
BAZ2B 0.0759494 0.3136011 2.6231574 0.0000013 0 0.0007909 0.0000989 STR FOXP1 CSMD1.VAR1
ZP3 0.5232068 0.3053643 0.5005308 0.0084116 0 1.0000000 0.0209946 STR FOXP1 CSMD1.VAR1
PCM1 0.0738397 0.3033659 2.5406737 0.0000022 0 0.0013322 0.0001480 STR FOXP1 CSMD1.VAR1
HSPA5 0.1940928 0.2981084 1.1232463 0.0000053 0 0.0032071 0.0002291 STR FOXP1 CSMD1.VAR1
TUT4 0.0864979 0.2977403 2.1186966 0.0000027 0 0.0016741 0.0001674 STR FOXP1 CSMD1.VAR1
PDIA3 0.1624473 0.2961657 1.2698763 0.0000041 0 0.0025181 0.0002182 STR FOXP1 CSMD1.VAR1
YWHAZ 0.0928270 0.2948632 1.9477265 0.0000043 0 0.0026471 0.0002182 STR FOXP1 CSMD1.VAR1
ADGRL3.var1 0.0590717 0.2935303 2.9994855 0.0000068 0 0.0041660 0.0002314 STR FOXP1 CSMD1.VAR1
ENO1 0.2784810 0.2929199 0.8316894 0.0000464 0 0.0282583 0.0009116 STR FOXP1 CSMD1.VAR1
RPL24 0.2405063 0.2897575 0.9191462 0.0000245 0 0.0149087 0.0006212 STR FOXP1 CSMD1.VAR1
RERE 0.0907173 0.2896889 1.9305814 0.0000062 0 0.0037618 0.0002314 STR FOXP1 CSMD1.VAR1
RBM39 0.1265823 0.2859884 1.4620438 0.0000065 0 0.0039383 0.0002314 STR FOXP1 CSMD1.VAR1
P4HA1 0.1033755 0.2858879 1.7090458 0.0000064 0 0.0039034 0.0002314 STR FOXP1 CSMD1.VAR1
TAX1BP1 0.1919831 0.2827679 1.0544334 0.0000218 0 0.0132811 0.0006212 STR FOXP1 CSMD1.VAR1
RFX2 0.3713080 0.2781583 0.6199814 0.0009686 0 0.5898851 0.0053626 STR FOXP1 CSMD1.VAR1
RBFOX2 0.0886076 0.2737074 1.8174886 0.0000125 0 0.0075824 0.0003991 STR FOXP1 CSMD1.VAR1
HNRNPU 0.1350211 0.2720803 1.2988380 0.0000209 0 0.0127435 0.0006212 STR FOXP1 CSMD1.VAR1
LINGO1 0.8556034 0.0538529 0.0320835 0.0000073 1 0.0001391 0.0001391 STR FOXP1 IGF2R
MT-RNR2 0.6616379 0.0454021 0.0466909 0.0000525 1 0.0009983 0.0004991 STR FOXP1 IGF2R
IGF2R 0.8857759 0.0311593 0.0160190 0.0001299 1 0.0024675 0.0008225 STR FOXP1 IGF2R


7.5 Heatmap of cell subclasses - log(CPM + 1)

7.6 Heatmap of cell subclasses - scale(log(CPM + 1))




8 Subtypes identification based on CSSG genes

8.1 UMAP visualization


8.2 Subtypes - cell composition


8.3 Subtypes markers - top 25


Top 25 markers
genes pct_occurrence esm avg_logFC p_val subtype p_adj_bf p_adj_bh cluster
RPS8 1.0000000 1.3344951 1.2839420 0.0000000 BFN CHAT IGF2R - RPS8 0.0000000 0.0000000 1
ENSG00000225200 0.3013699 0.6973305 1.6968018 0.0000000 BFN CHAT IGF2R - RPS8 0.0000014 0.0000007 1
GBE1.var1 0.1369863 0.2625792 0.9597032 0.0497884 BFN CHAT IGF2R - RPS8 1.0000000 0.5065040 1
RPL27 0.3150685 0.2313823 0.5109241 0.0264977 BFN CHAT IGF2R - RPS8 1.0000000 0.4681252 1
RPS3A 0.3013699 0.2124631 0.4827664 0.0496677 BFN CHAT IGF2R - RPS8 1.0000000 0.5065040 1
RPS12 1.0000000 1.7358347 1.8655359 0.0000000 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0000000 0.0000000 0
CENPP.var1 0.1071429 1.4124188 5.2430004 0.0000000 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0000000 0.0000000 0
GUSBP1 0.1071429 1.2992770 4.7789013 0.0000000 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0000001 0.0000000 0
CROCC 0.1071429 1.2884899 4.7519045 0.0000000 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0000001 0.0000000 0
TAF1 0.1428571 1.2783193 4.1886820 0.0000000 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0000000 0.0000000 0
MTSS1.var1 0.1071429 1.2198895 4.6264719 0.0000000 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0000001 0.0000000 0
ENSG00000250646 0.1428571 1.0488248 3.6399445 0.0000000 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0000028 0.0000004 0
COBLL1 0.1071429 1.0357221 3.9816536 0.0000001 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0000265 0.0000033 0
LSAMP.var2 0.1785714 1.0242122 3.0928848 0.0000003 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0000959 0.0000107 0
NUDC 0.1785714 0.8575466 2.6725238 0.0000103 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0028499 0.0002850 0
JARID2 0.1071429 0.8291356 3.1774054 0.0000738 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0205157 0.0012822 0
AURKAIP1 0.1071429 0.8287884 3.3094208 0.0000123 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0034078 0.0003098 0
FNBP1L 0.2142857 0.7917097 2.2793077 0.0000540 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0150055 0.0010718 0
LSAMP.var1 0.1071429 0.7751621 3.1350246 0.0000352 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0097960 0.0008163 0
PKIA 0.1071429 0.7638599 2.9879056 0.0001624 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0451588 0.0021504 0
RTN4 0.2142857 0.7501942 2.1801023 0.0000888 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0246964 0.0013720 0
SEC62 0.1428571 0.7500903 2.6343892 0.0001136 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0315937 0.0015797 0
ISG15 0.1785714 0.7469509 2.4134624 0.0000583 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0161940 0.0010796 0
PSMC6 0.1428571 0.7409752 2.6856124 0.0000440 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0122346 0.0009411 0
TMEM183A 0.1071429 0.7333721 2.9806537 0.0000877 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0243677 0.0013720 0
SRSF10 0.1428571 0.7317787 2.5434965 0.0002712 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0754030 0.0029001 0
KPNA4 0.1428571 0.7267254 2.5643234 0.0001829 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0508590 0.0022846 0
PRKRIP1 0.1071429 0.7225618 2.8579036 0.0003401 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0945457 0.0035017 0
FAM13A 0.1785714 0.7137995 2.2527492 0.0002544 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0707181 0.0028287 0
UBE3A 0.1071429 0.7050798 2.8676510 0.0001890 CTX FOXG1 CSMD1.VAR1 - RPS12 0.0525449 0.0022846 0
BCOR 1.0000000 1.5722349 1.6221742 0.0000000 MEL DCT IGF2R - BCOR 0.0000000 0.0000000 1
CHEK1 0.1086957 1.0515402 4.3654275 0.0000000 MEL DCT IGF2R - BCOR 0.0000000 0.0000000 1
CCL2 0.1304348 0.8911446 3.3501471 0.0000000 MEL DCT IGF2R - BCOR 0.0000012 0.0000004 1
EYS.var1 0.1304348 0.5776263 2.1434505 0.0004476 MEL DCT IGF2R - BCOR 0.0281991 0.0070498 1
ISG15 0.1086957 0.4606969 1.8813831 0.0053922 MEL DCT IGF2R - BCOR 0.3397077 0.0485297 1
MAP1LC3BP1 0.1086957 0.3834625 1.6008229 0.0162029 MEL DCT IGF2R - BCOR 1.0000000 0.1275978 1
UBB 0.1521739 0.3703180 1.2798274 0.0190816 MEL DCT IGF2R - BCOR 1.0000000 0.1335710 1
SOD1 0.1086957 0.3229508 1.3441459 0.0452034 MEL DCT IGF2R - BCOR 1.0000000 0.2373180 1
RPL10A 0.2391304 0.3159175 0.8488091 0.0369138 MEL DCT IGF2R - BCOR 1.0000000 0.2114152 1
RPL32 0.3260870 0.2966709 0.6525578 0.0337460 MEL DCT IGF2R - BCOR 1.0000000 0.2114152 1
LINGO1 0.9347826 0.2882082 0.1567677 0.0009318 MEL DCT IGF2R - BCOR 0.0587027 0.0117405 1
IGF2R 0.9565217 0.2715999 0.1264675 0.0020959 MEL DCT IGF2R - BCOR 0.1320395 0.0220066 1
PRELID2.var2 0.1153846 1.6064814 5.4815062 0.0000000 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000000 0.0000000 0
ACOT8 0.1153846 1.5698545 5.7619030 0.0000000 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000000 0.0000000 0
RPL13 1.0000000 1.5405579 1.6564079 0.0000000 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000000 0.0000000 0
RPL13P12 0.6923077 1.4497266 2.1263111 0.0000000 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000000 0.0000000 0
GREB1 0.1153846 1.4044220 4.8800325 0.0000000 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000000 0.0000000 0
LGALS8 0.1153846 1.2906037 4.6771424 0.0000000 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000000 0.0000000 0
EXTL2 0.1153846 1.2565787 4.4506676 0.0000000 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000007 0.0000001 0
SEC22B 0.1153846 1.1091395 3.9529308 0.0000002 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000738 0.0000077 0
LINC02163 0.1153846 1.0579240 3.8675860 0.0000002 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000776 0.0000077 0
DEPDC1 0.1153846 1.0472967 3.8497221 0.0000002 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000837 0.0000077 0
RAPGEF4 0.1153846 1.0311411 3.7269765 0.0000010 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0003846 0.0000281 0
MCRIP1 0.1153846 1.0157578 3.7918057 0.0000002 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000925 0.0000077 0
FNDC3B.var1 0.1153846 1.0019321 3.7806195 0.0000002 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0000858 0.0000077 0
SUCNR1 0.1153846 0.9727785 3.6225650 0.0000011 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0004400 0.0000281 0
NUP58 0.1538462 0.9727763 3.1921396 0.0000014 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0005429 0.0000319 0
MEA1 0.1153846 0.9621085 3.6053276 0.0000012 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0004500 0.0000281 0
UXT 0.1153846 0.9358873 3.5630951 0.0000012 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0004500 0.0000281 0
SYNRG 0.1153846 0.9015623 3.4159475 0.0000046 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0017880 0.0000993 0
MPHOSPH8 0.1538462 0.8889530 2.9718282 0.0000066 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0025553 0.0001278 0
PRKACB 0.1153846 0.8537026 3.2034644 0.0000367 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0142974 0.0005106 0
SBDS 0.1153846 0.8528222 3.2578172 0.0000151 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0058721 0.0002521 0
SND1 0.1153846 0.8435688 3.1791020 0.0000343 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0133615 0.0004949 0
UBE2I 0.1153846 0.8418837 3.3044850 0.0000050 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0019382 0.0001020 0
GAPDH 0.2307692 0.8368222 2.3561555 0.0000152 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0059364 0.0002521 0
CCDC90B 0.1538462 0.8181063 2.8135895 0.0000166 MEL TYRP1 CSMD1.VAR1 - RPL13 0.0064650 0.0002521 0
PTMA 1.0000000 1.4588017 1.5469278 0.0000000 STR FOXP1 CSMD1.VAR1 - PTMA 0.0000000 0.0000000 0
CCDC137 0.1250000 1.2812323 4.8578536 0.0000000 STR FOXP1 CSMD1.VAR1 - PTMA 0.0000000 0.0000000 0
MAP1B 0.4500000 0.8660487 1.6975666 0.0000002 STR FOXP1 CSMD1.VAR1 - PTMA 0.0000750 0.0000131 0
PGAM1 0.1250000 0.8437431 3.2327528 0.0000002 STR FOXP1 CSMD1.VAR1 - PTMA 0.0000786 0.0000131 0
RAB3GAP2 0.1250000 0.8386824 3.3487434 0.0000000 STR FOXP1 CSMD1.VAR1 - PTMA 0.0000064 0.0000021 0
RAD21 0.2750000 0.8163744 2.1357863 0.0000004 STR FOXP1 CSMD1.VAR1 - PTMA 0.0001285 0.0000184 0
HADHA 0.1750000 0.7981826 2.7202476 0.0000001 STR FOXP1 CSMD1.VAR1 - PTMA 0.0000282 0.0000071 0
ACIN1 0.1500000 0.7803445 2.7871664 0.0000009 STR FOXP1 CSMD1.VAR1 - PTMA 0.0002861 0.0000318 0
APEX1 0.1250000 0.7789786 3.0443775 0.0000009 STR FOXP1 CSMD1.VAR1 - PTMA 0.0002789 0.0000318 0
SNRPD1 0.2000000 0.7660711 2.3862063 0.0000012 STR FOXP1 CSMD1.VAR1 - PTMA 0.0003856 0.0000386 0
SPEN 0.1250000 0.7309968 2.8858590 0.0000024 STR FOXP1 CSMD1.VAR1 - PTMA 0.0007841 0.0000675 0
HNRNPDL 0.3000000 0.7077001 1.7714182 0.0000111 STR FOXP1 CSMD1.VAR1 - PTMA 0.0035822 0.0001885 0
PTMAP5 0.1500000 0.6949178 2.5771341 0.0000025 STR FOXP1 CSMD1.VAR1 - PTMA 0.0008099 0.0000675 0
DDX18 0.1250000 0.6926468 2.7587245 0.0000059 STR FOXP1 CSMD1.VAR1 - PTMA 0.0018911 0.0001351 0
RPL36AL 0.1500000 0.6899392 2.4766900 0.0000135 STR FOXP1 CSMD1.VAR1 - PTMA 0.0043489 0.0002174 0
PTP4A2 0.1250000 0.6847503 2.7410566 0.0000064 STR FOXP1 CSMD1.VAR1 - PTMA 0.0020674 0.0001363 0
PTMAP10 0.1500000 0.6847461 2.5553624 0.0000028 STR FOXP1 CSMD1.VAR1 - PTMA 0.0008894 0.0000684 0
H3-3A 0.2500000 0.6760060 1.9387440 0.0000078 STR FOXP1 CSMD1.VAR1 - PTMA 0.0025135 0.0001396 0
MSI2 0.1250000 0.6709373 2.5572639 0.0000676 STR FOXP1 CSMD1.VAR1 - PTMA 0.0218502 0.0007804 0
UCHL1 0.2000000 0.6704420 2.0612458 0.0000448 STR FOXP1 CSMD1.VAR1 - PTMA 0.0144613 0.0005785 0
PAK2 0.1250000 0.6653537 2.6970277 0.0000068 STR FOXP1 CSMD1.VAR1 - PTMA 0.0022028 0.0001363 0
EEF2 0.2000000 0.6637371 2.0941326 0.0000165 STR FOXP1 CSMD1.VAR1 - PTMA 0.0053405 0.0002543 0
ATP1B3 0.1250000 0.6486342 2.5436651 0.0000492 STR FOXP1 CSMD1.VAR1 - PTMA 0.0158897 0.0006111 0
DAAM1 0.1500000 0.6454262 2.3305504 0.0000416 STR FOXP1 CSMD1.VAR1 - PTMA 0.0134506 0.0005730 0
SNHG3 0.1250000 0.6395156 2.6377637 0.0000072 STR FOXP1 CSMD1.VAR1 - PTMA 0.0023173 0.0001363 0
RPLP1 1.0000000 1.4631453 1.5673032 0.0000000 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0000000 0.0000000 0
BTF3L4 0.2500000 1.0573877 2.8682368 0.0000000 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0000000 0.0000000 0
TMBIM6 0.1590909 0.7364418 2.5401304 0.0000026 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0005941 0.0001837 0
ENSG00000226532 0.2500000 0.7201496 1.9832819 0.0000033 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0007349 0.0001837 0
NEAT1 0.1136364 0.6333231 2.5706313 0.0000772 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0174387 0.0034877 0
RPS19P3 0.1590909 0.5840033 2.0302381 0.0001897 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0428813 0.0062374 0
PPP2R5C 0.1590909 0.5785832 2.0206542 0.0001932 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0436619 0.0062374 0
PUM3 0.1363636 0.5693585 2.1370245 0.0002731 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0617202 0.0077150 0
CASC15 0.1136364 0.5607304 2.2961788 0.0003867 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0873880 0.0092509 0
ANP32E 0.2045455 0.5456766 1.6848629 0.0004093 STR FOXP1 CSMD1.VAR1 - RPLP1 0.0925094 0.0092509 0
RPLP0 0.4318182 0.5414592 1.0539675 0.0007393 STR FOXP1 CSMD1.VAR1 - RPLP1 0.1670708 0.0139226 0
HSPB11 0.1363636 0.5231103 1.9908564 0.0006770 STR FOXP1 CSMD1.VAR1 - RPLP1 0.1529915 0.0139083 0
EIF4EBP1 0.1136364 0.4887102 2.0368565 0.0016191 STR FOXP1 CSMD1.VAR1 - RPLP1 0.3659130 0.0261366 0
ENSG00000229119 0.1818182 0.4811665 1.5907923 0.0015514 STR FOXP1 CSMD1.VAR1 - RPLP1 0.3506192 0.0261366 0
PSMD14 0.1136364 0.4648468 1.9285309 0.0029497 STR FOXP1 CSMD1.VAR1 - RPLP1 0.6666267 0.0444418 0
ACTB 0.2045455 0.4582353 1.3975500 0.0033387 STR FOXP1 CSMD1.VAR1 - RPLP1 0.7545405 0.0471588 0
RPLP0P2 0.2045455 0.4441298 1.3532703 0.0045057 STR FOXP1 CSMD1.VAR1 - RPLP1 1.0000000 0.0598992 0
BNIP3L 0.1590909 0.4347504 1.5190449 0.0054324 STR FOXP1 CSMD1.VAR1 - RPLP1 1.0000000 0.0637380 0
RPS26 0.1136364 0.4328657 1.8017929 0.0053163 STR FOXP1 CSMD1.VAR1 - RPLP1 1.0000000 0.0637380 0
RTN4 0.1363636 0.4291148 1.5876414 0.0089190 STR FOXP1 CSMD1.VAR1 - RPLP1 1.0000000 0.0719894 0
ASH1L 0.1363636 0.4275491 1.5955921 0.0077580 STR FOXP1 CSMD1.VAR1 - RPLP1 1.0000000 0.0692810 0
EIF2S3 0.1136364 0.4270990 1.7513152 0.0079704 STR FOXP1 CSMD1.VAR1 - RPLP1 1.0000000 0.0692810 0
RPS25 0.3181818 0.4253387 0.9863266 0.0066019 STR FOXP1 CSMD1.VAR1 - RPLP1 1.0000000 0.0678199 0
FAM153CP 0.1136364 0.4188861 1.7656201 0.0057787 STR FOXP1 CSMD1.VAR1 - RPLP1 1.0000000 0.0637380 0
ISG15 0.1136364 0.4183030 1.7626639 0.0059226 STR FOXP1 CSMD1.VAR1 - RPLP1 1.0000000 0.0637380 0
RPS8 1.0000000 1.2369979 1.2196636 0.0000000 STR FOXP1 CSMD1.VAR1 - RPS8 0.0000000 0.0000000 0
ENSG00000225200 0.3802817 0.8823959 1.9761556 0.0000000 STR FOXP1 CSMD1.VAR1 - RPS8 0.0000000 0.0000000 0
LSM3 0.1267606 0.6354579 2.6964633 0.0000001 STR FOXP1 CSMD1.VAR1 - RPS8 0.0000213 0.0000071 0
ANKRD17 0.1408451 0.6221714 2.4561039 0.0000003 STR FOXP1 CSMD1.VAR1 - RPS8 0.0000865 0.0000216 0
HCK 0.1549296 0.5780454 2.1687634 0.0000015 STR FOXP1 CSMD1.VAR1 - RPS8 0.0004424 0.0000885 0
GBE1.var1 0.2253521 0.5440468 1.6407210 0.0000084 STR FOXP1 CSMD1.VAR1 - RPS8 0.0025258 0.0004210 0
HNRNPC 0.2957746 0.5434708 1.4004591 0.0000119 STR FOXP1 CSMD1.VAR1 - RPS8 0.0035880 0.0005126 0
RPL26 0.3802817 0.5394287 1.1792802 0.0000245 STR FOXP1 CSMD1.VAR1 - RPS8 0.0073938 0.0009242 0
DST.var1 0.1549296 0.5227318 1.9052711 0.0000316 STR FOXP1 CSMD1.VAR1 - RPS8 0.0095395 0.0009540 0
RPS29 0.2112676 0.5173619 1.6100862 0.0000299 STR FOXP1 CSMD1.VAR1 - RPS8 0.0090331 0.0009540 0
RPL9 0.3943662 0.5070723 1.0951960 0.0001076 STR FOXP1 CSMD1.VAR1 - RPS8 0.0325027 0.0024416 0
RPS5 0.3943662 0.4985068 1.0559084 0.0001514 STR FOXP1 CSMD1.VAR1 - RPS8 0.0457319 0.0030450 0
RPL12 0.3661972 0.4976803 1.1034779 0.0000871 STR FOXP1 CSMD1.VAR1 - RPS8 0.0263048 0.0021921 0
RPL6 0.4225352 0.4759262 0.9548639 0.0003322 STR FOXP1 CSMD1.VAR1 - RPS8 0.1003321 0.0047777 0
DSTN 0.1267606 0.4756406 1.9453336 0.0001132 STR FOXP1 CSMD1.VAR1 - RPS8 0.0341822 0.0024416 0
ENSA 0.1267606 0.4676952 1.9029619 0.0001714 STR FOXP1 CSMD1.VAR1 - RPS8 0.0517652 0.0030450 0
FTL 0.4929577 0.4671809 0.8392718 0.0008482 STR FOXP1 CSMD1.VAR1 - RPS8 0.2561608 0.0083598 0
SELENOF 0.1267606 0.4645262 1.9578419 0.0000570 STR FOXP1 CSMD1.VAR1 - RPS8 0.0172154 0.0015650 0
TAX1BP1 0.2957746 0.4632297 1.1746479 0.0002086 STR FOXP1 CSMD1.VAR1 - RPS8 0.0629941 0.0034997 0
RPS16 0.4366197 0.4581201 0.8901241 0.0006325 STR FOXP1 CSMD1.VAR1 - RPS8 0.1910118 0.0072869 0
RPL38 0.2112676 0.4559923 1.4241573 0.0001651 STR FOXP1 CSMD1.VAR1 - RPS8 0.0498487 0.0030450 0
CFL1 0.1830986 0.4434203 1.4807761 0.0003055 STR FOXP1 CSMD1.VAR1 - RPS8 0.0922527 0.0046126 0
RPL37A 0.3380282 0.4341397 1.0005841 0.0007434 STR FOXP1 CSMD1.VAR1 - RPS8 0.2245216 0.0079390 0
RPLP2 0.4507042 0.4286367 0.8228497 0.0033442 STR FOXP1 CSMD1.VAR1 - RPS8 1.0000000 0.0219556 0
RPS6 0.4647887 0.4220859 0.7790457 0.0020509 STR FOXP1 CSMD1.VAR1 - RPS8 0.6193605 0.0158810 0
ZP3 1.0000000 1.3604877 1.3658113 0.0000000 STR FOXP1 CSMD1.VAR1 - ZP3 0.0000000 0.0000000 0
ANKRD17 0.1097561 0.5088567 2.2044952 0.0000521 STR FOXP1 CSMD1.VAR1 - ZP3 0.0060923 0.0022068 0
YME1L1 0.1097561 0.4964773 2.1671524 0.0000566 STR FOXP1 CSMD1.VAR1 - ZP3 0.0066204 0.0022068 0
ARHGEF4 0.1219512 0.4012971 1.6741248 0.0006037 STR FOXP1 CSMD1.VAR1 - ZP3 0.0706278 0.0176570 0
TOMM20 0.1463415 0.3588462 1.3504782 0.0020885 STR FOXP1 CSMD1.VAR1 - ZP3 0.2443594 0.0472771 0
LUC7L3 0.1585366 0.3489315 1.2437058 0.0030895 STR FOXP1 CSMD1.VAR1 - ZP3 0.3614749 0.0516393 0
SLC35F1 0.1097561 0.3422055 1.5234396 0.0024245 STR FOXP1 CSMD1.VAR1 - ZP3 0.2836628 0.0472771 0
TENM2.var1 0.1219512 0.3331519 1.3845307 0.0041305 STR FOXP1 CSMD1.VAR1 - ZP3 0.4832741 0.0604093 0
STMN2 0.1463415 0.3075400 1.1669564 0.0072283 STR FOXP1 CSMD1.VAR1 - ZP3 0.8457149 0.0937712 0
CALR 0.1341463 0.3049920 1.2034795 0.0080146 STR FOXP1 CSMD1.VAR1 - ZP3 0.9377122 0.0937712 0
CANX 0.1707317 0.2991568 1.0198509 0.0102460 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.1038494 0
HNRNPA1 0.1951220 0.2959827 0.9394255 0.0106512 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.1038494 0
PDIA3 0.1951220 0.2773678 0.8582193 0.0190807 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.1594598 0
P4HA1 0.1219512 0.2734533 1.1070420 0.0229616 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.1679069 0
HSP90B1 0.2926829 0.2669656 0.6472081 0.0219546 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.1679069 0
ENO1 0.3048780 0.2611629 0.6119233 0.0256411 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.1764709 0
SLC12A2 0.1829268 0.2523493 0.8144649 0.0333889 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.2025703 0
HP1BP3 0.1341463 0.2512735 0.9697857 0.0343462 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.2025703 0
SET 0.1219512 0.2426772 0.9850244 0.0401228 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.2208907 0
RBFOX2 0.1097561 0.2413915 1.0557095 0.0346274 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.2025703 0
MALAT1 0.9756098 0.2361951 0.0931276 0.0172943 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.1556483 0
CSDE1 0.1097561 0.2344258 1.0230531 0.0415350 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.2208907 0
MAP2 0.1097561 0.2256020 0.9833050 0.0481480 STR FOXP1 CSMD1.VAR1 - ZP3 1.0000000 0.2449269 0
RASGEF1B.var1 1.0000000 1.7880465 1.8925364 0.0000000 STR FOXP1 IGF2R - RASGEF1B.VAR1 0.0000000 0.0000000 1
ATP2B1 0.1200000 0.8073286 2.9031510 0.0003528 STR FOXP1 IGF2R - RASGEF1B.VAR1 0.0352818 0.0124826 1
TRA2A 0.1200000 0.7608349 2.8161976 0.0003745 STR FOXP1 IGF2R - RASGEF1B.VAR1 0.0374478 0.0124826 1
SUB1 0.1600000 0.7468973 2.3559440 0.0010819 STR FOXP1 IGF2R - RASGEF1B.VAR1 0.1081928 0.0270482 1
ENSG00000244313 0.1200000 0.6000338 2.2628051 0.0056703 STR FOXP1 IGF2R - RASGEF1B.VAR1 0.5670290 0.0964707 1
UHRF2 0.1600000 0.5947780 1.9505333 0.0057882 STR FOXP1 IGF2R - RASGEF1B.VAR1 0.5788239 0.0964707 1
ARID4B 0.1600000 0.5699812 1.9042726 0.0069280 STR FOXP1 IGF2R - RASGEF1B.VAR1 0.6928017 0.0989717 1
PFDN4 0.1200000 0.5513185 2.1070053 0.0097441 STR FOXP1 IGF2R - RASGEF1B.VAR1 0.9744104 0.1218013 1
NPM1P27 0.1600000 0.4981693 1.6067773 0.0270297 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.2252474 1
RTN3 0.1600000 0.4748936 1.5791241 0.0256084 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.2252474 1
SNRPD2 0.2400000 0.4742361 1.2724720 0.0223333 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.2233335 1
RPL4 0.3600000 0.4547904 0.9400269 0.0165414 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.1837929 1
ARL6IP1 0.1200000 0.4507569 1.6905639 0.0492534 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.2751818 1
EID1 0.1200000 0.4398219 1.6656554 0.0495327 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.2751818 1
COX6C 0.1600000 0.4226849 1.4142477 0.0458982 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.2751818 1
RPS2P7 0.2000000 0.4213620 1.2449990 0.0445071 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.2751818 1
MT-ND4 0.5600000 0.3646071 0.5415190 0.0473216 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.2751818 1
IGF2R 0.9200000 0.1392012 0.0660705 0.0425711 STR FOXP1 IGF2R - RASGEF1B.VAR1 1.0000000 0.2751818 1
ZP3 1.0000000 1.3363190 1.3191601 0.0000000 STR FOXP1 IGF2R - ZP3 0.0000000 0.0000000 1
RPL7AP6 0.1136364 0.3384139 1.3845180 0.0369518 STR FOXP1 IGF2R - ZP3 1.0000000 0.3694020 1
RPL32 0.3181818 0.3005232 0.6588549 0.0286227 STR FOXP1 IGF2R - ZP3 1.0000000 0.3694020 1
RPL13A 1.0000000 1.4977488 1.6060522 0.0000000 STR TAC1 CSMD1.VAR1 - RPL13A 0.0000000 0.0000000 0
SMAD5 0.1333333 1.2840151 4.3717946 0.0000000 STR TAC1 CSMD1.VAR1 - RPL13A 0.0000000 0.0000000 0
RPL13AP5 0.6000000 1.1149563 1.7738655 0.0000000 STR TAC1 CSMD1.VAR1 - RPL13A 0.0000007 0.0000002 0
ATP5MC1 0.1666667 0.8978493 2.9498568 0.0000008 STR TAC1 CSMD1.VAR1 - RPL13A 0.0001573 0.0000393 0
USP15 0.1333333 0.8464697 3.0210255 0.0000102 STR TAC1 CSMD1.VAR1 - RPL13A 0.0020943 0.0003243 0
RPL12P47 0.1333333 0.8457047 3.0663064 0.0000046 STR TAC1 CSMD1.VAR1 - RPL13A 0.0009383 0.0001877 0
MPHOSPH10 0.1666667 0.8278556 2.6699463 0.0000155 STR TAC1 CSMD1.VAR1 - RPL13A 0.0031903 0.0003988 0
SC5D 0.1333333 0.8164517 2.9682924 0.0000110 STR TAC1 CSMD1.VAR1 - RPL13A 0.0022702 0.0003243 0
SVIL.var1 0.1333333 0.7293337 2.6772877 0.0000855 STR TAC1 CSMD1.VAR1 - RPL13A 0.0176216 0.0016216 0
NEAT1 0.1333333 0.7211433 2.6598787 0.0000866 STR TAC1 CSMD1.VAR1 - RPL13A 0.0178380 0.0016216 0
RPL13AP25 0.2000000 0.7186846 2.1816122 0.0000982 STR TAC1 CSMD1.VAR1 - RPL13A 0.0202268 0.0016856 0
NDUFB11 0.1666667 0.7019533 2.3672597 0.0000853 STR TAC1 CSMD1.VAR1 - RPL13A 0.0175629 0.0016216 0
CYRIB 0.1666667 0.6936841 2.2826868 0.0002348 STR TAC1 CSMD1.VAR1 - RPL13A 0.0483614 0.0034544 0
EFCAB10 0.1333333 0.6913436 2.4214840 0.0009306 STR TAC1 CSMD1.VAR1 - RPL13A 0.1916954 0.0079873 0
CDC5L 0.1333333 0.6823803 2.4858589 0.0003629 STR TAC1 CSMD1.VAR1 - RPL13A 0.0747643 0.0047146 0
SNRPF 0.1666667 0.6660120 2.1932343 0.0004729 STR TAC1 CSMD1.VAR1 - RPL13A 0.0974148 0.0056048 0
COX6B1 0.2000000 0.6609795 2.0637527 0.0001814 STR TAC1 CSMD1.VAR1 - RPL13A 0.0373639 0.0028741 0
ATP5MK 0.1666667 0.6600682 2.2001798 0.0003662 STR TAC1 CSMD1.VAR1 - RPL13A 0.0754337 0.0047146 0
DDX1 0.1333333 0.6450960 2.3801027 0.0005986 STR TAC1 CSMD1.VAR1 - RPL13A 0.1233046 0.0056048 0
GLO1 0.1333333 0.6408138 2.3495168 0.0008067 STR TAC1 CSMD1.VAR1 - RPL13A 0.1661755 0.0072250 0
VAPA 0.1333333 0.6347558 2.3621405 0.0005897 STR TAC1 CSMD1.VAR1 - RPL13A 0.1214842 0.0056048 0
SLC25A3 0.1666667 0.6291340 2.1212689 0.0005965 STR TAC1 CSMD1.VAR1 - RPL13A 0.1228891 0.0056048 0
COMMD6 0.1333333 0.6281160 2.3478890 0.0005839 STR TAC1 CSMD1.VAR1 - RPL13A 0.1202844 0.0056048 0
CFH 0.1333333 0.6250353 2.3391821 0.0005956 STR TAC1 CSMD1.VAR1 - RPL13A 0.1226950 0.0056048 0
GOLGA4 0.1333333 0.6068517 2.2287706 0.0015534 STR TAC1 CSMD1.VAR1 - RPL13A 0.3200018 0.0126093 0
BCOR 1.0000000 1.3808640 1.4862081 0.0000000 Unknow CSMD1.VAR1 - BCOR 0.0000000 0.0000000 0
MAGED1 0.1176471 1.1871965 4.4412886 0.0000000 Unknow CSMD1.VAR1 - BCOR 0.0000000 0.0000000 0
NSG2 0.1176471 1.0741069 4.0830342 0.0000000 Unknow CSMD1.VAR1 - BCOR 0.0000002 0.0000000 0
ZFR 0.1470588 1.0672533 3.5677424 0.0000000 Unknow CSMD1.VAR1 - BCOR 0.0000017 0.0000003 0
SLC38A1 0.1176471 1.0518642 4.0320575 0.0000000 Unknow CSMD1.VAR1 - BCOR 0.0000002 0.0000000 0
EXOC5 0.1176471 1.0371423 4.0094051 0.0000000 Unknow CSMD1.VAR1 - BCOR 0.0000002 0.0000000 0
GOLM2 0.1176471 0.8347395 3.2023925 0.0000038 Unknow CSMD1.VAR1 - BCOR 0.0006930 0.0000795 0
ANAPC16 0.1176471 0.8128174 3.1533861 0.0000039 Unknow CSMD1.VAR1 - BCOR 0.0007153 0.0000795 0
SQLE 0.1470588 0.8034437 2.8541531 0.0000026 Unknow CSMD1.VAR1 - BCOR 0.0004746 0.0000678 0
LINC00632 0.1470588 0.8028898 2.7827514 0.0000092 Unknow CSMD1.VAR1 - BCOR 0.0016882 0.0001688 0
TCF4 0.1176471 0.7965287 3.0131901 0.0000209 Unknow CSMD1.VAR1 - BCOR 0.0038178 0.0003182 0
ZNF292 0.2058824 0.7528631 2.2288205 0.0000261 Unknow CSMD1.VAR1 - BCOR 0.0047756 0.0003411 0
LYST 0.1176471 0.7520110 2.9246510 0.0000233 Unknow CSMD1.VAR1 - BCOR 0.0042618 0.0003278 0
GPBP1 0.1176471 0.7395574 2.8496274 0.0000456 Unknow CSMD1.VAR1 - BCOR 0.0083476 0.0005565 0
PCLO 0.1176471 0.7266806 2.9196978 0.0000121 Unknow CSMD1.VAR1 - BCOR 0.0022080 0.0002007 0
PTTG1IP 0.1764706 0.7030474 2.2629808 0.0000784 Unknow CSMD1.VAR1 - BCOR 0.0143450 0.0008438 0
DHX36 0.1764706 0.6779476 2.2554327 0.0000505 Unknow CSMD1.VAR1 - BCOR 0.0092341 0.0005771 0
DAAM1 0.1470588 0.6556155 2.3198775 0.0002177 Unknow CSMD1.VAR1 - BCOR 0.0398398 0.0019920 0
CCNL1 0.1470588 0.6381817 2.3081899 0.0001812 Unknow CSMD1.VAR1 - BCOR 0.0331517 0.0017448 0
SRP72 0.1470588 0.6244240 2.2828790 0.0001777 Unknow CSMD1.VAR1 - BCOR 0.0325260 0.0017448 0
CHD9 0.1470588 0.6206576 2.1826140 0.0005840 Unknow CSMD1.VAR1 - BCOR 0.1068741 0.0041105 0
NEFM 0.1470588 0.6170127 2.2412321 0.0002727 Unknow CSMD1.VAR1 - BCOR 0.0498966 0.0023760 0
TRIM33 0.1176471 0.6168987 2.4356316 0.0005271 Unknow CSMD1.VAR1 - BCOR 0.0964591 0.0040191 0
POU2F1 0.2058824 0.6147764 1.8937211 0.0002974 Unknow CSMD1.VAR1 - BCOR 0.0544198 0.0024736 0
MAGI1 0.1176471 0.6091796 2.3560261 0.0010903 Unknow CSMD1.VAR1 - BCOR 0.1995212 0.0071258 0
RPS19 1.0000000 1.6887561 1.8337854 0.0000000 Unknow CSMD1.VAR1 - RPS19 0.0000000 0.0000000 0
LAMTOR1 0.1250000 1.1288325 4.0295027 0.0000000 Unknow CSMD1.VAR1 - RPS19 0.0000006 0.0000003 0
ARHGAP5 0.1250000 0.9074464 3.4464325 0.0000001 Unknow CSMD1.VAR1 - RPS19 0.0000326 0.0000109 0
DST.var1 0.2187500 0.7995230 2.2952068 0.0000109 Unknow CSMD1.VAR1 - RPS19 0.0027127 0.0004312 0
ZKSCAN1 0.1250000 0.7674600 2.9832437 0.0000053 Unknow CSMD1.VAR1 - RPS19 0.0013020 0.0002604 0
LMO7 0.1250000 0.7649051 2.9815967 0.0000051 Unknow CSMD1.VAR1 - RPS19 0.0012620 0.0002604 0
PSMD8 0.1250000 0.7627014 2.9266524 0.0000122 Unknow CSMD1.VAR1 - RPS19 0.0030183 0.0004312 0
PHPT1 0.1875000 0.7488410 2.3332611 0.0000346 Unknow CSMD1.VAR1 - RPS19 0.0085905 0.0010738 0
RPS19P3 0.1875000 0.7051697 2.2169681 0.0000804 Unknow CSMD1.VAR1 - RPS19 0.0199336 0.0022148 0
SERGEF 0.1250000 0.6659613 2.5976265 0.0001089 Unknow CSMD1.VAR1 - RPS19 0.0270024 0.0024548 0
TMPO 0.1250000 0.6628265 2.5933279 0.0001025 Unknow CSMD1.VAR1 - RPS19 0.0254304 0.0024548 0
ANKRD36 0.1250000 0.6256031 2.4775202 0.0001991 Unknow CSMD1.VAR1 - RPS19 0.0493826 0.0041152 0
TCF12 0.1250000 0.6228879 2.4064674 0.0004802 Unknow CSMD1.VAR1 - RPS19 0.1190917 0.0070650 0
SNX6 0.1875000 0.6077113 1.9700328 0.0004114 Unknow CSMD1.VAR1 - RPS19 0.1020327 0.0070650 0
PRPF38B 0.1562500 0.5981911 2.1275450 0.0004342 Unknow CSMD1.VAR1 - RPS19 0.1076708 0.0070650 0
ENSG00000243829 0.1250000 0.5980858 2.3838011 0.0003312 Unknow CSMD1.VAR1 - RPS19 0.0821327 0.0063179 0
RABGAP1L 0.1562500 0.5980265 2.1071211 0.0005413 Unknow CSMD1.VAR1 - RPS19 0.1342341 0.0070650 0
NDUFB4 0.1250000 0.5918470 2.2530617 0.0014766 Unknow CSMD1.VAR1 - RPS19 0.3662070 0.0130788 0
JMJD1C 0.1562500 0.5908802 2.0763589 0.0007227 Unknow CSMD1.VAR1 - RPS19 0.1792364 0.0085351 0
BCLAF1 0.1875000 0.5835669 1.8948831 0.0006675 Unknow CSMD1.VAR1 - RPS19 0.1655478 0.0082774 0
ROBO1.var1 0.2187500 0.5826408 1.7375756 0.0008073 Unknow CSMD1.VAR1 - RPS19 0.2002092 0.0091004 0
RPL11 0.5000000 0.5787075 1.0166186 0.0019623 Unknow CSMD1.VAR1 - RPS19 0.4866405 0.0162213 0
AK5 0.1562500 0.5774503 2.0263725 0.0009947 Unknow CSMD1.VAR1 - RPS19 0.2466821 0.0107253 0
RPAP2 0.1250000 0.5771422 2.3039406 0.0005315 Unknow CSMD1.VAR1 - RPS19 0.1318019 0.0070650 0
ATP1B1 0.1250000 0.5736664 2.2973957 0.0005369 Unknow CSMD1.VAR1 - RPS19 0.1331402 0.0070650 0
SLC26A3 1.0000000 1.6163751 1.7840710 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000000 0.0000000 0
FRMD5 0.1428571 1.5124744 4.8052328 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000000 0.0000000 0
ZBTB2 0.1785714 1.4552427 4.2651236 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000000 0.0000000 0
ZBED8 0.1071429 1.3957153 5.1723987 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000000 0.0000000 0
LHFPL5 0.1071429 1.3819406 5.1643209 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000000 0.0000000 0
INTS10 0.1071429 1.2370075 4.6478291 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000001 0.0000000 0
HM13 0.1785714 1.1954703 3.6704095 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000001 0.0000000 0
ZDBF2 0.1071429 1.1917244 4.5666988 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000001 0.0000000 0
LATS1 0.1428571 1.1895292 3.9468007 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000006 0.0000001 0
PRDM2 0.1428571 1.1741843 3.9242470 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000006 0.0000001 0
ARL14EP 0.1428571 1.1700520 3.9128350 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000007 0.0000001 0
MSI2 0.2142857 1.1633143 3.2924646 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000003 0.0000000 0
RNF38 0.1071429 1.1458887 4.3143616 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000033 0.0000003 0
YAE1 0.1071429 1.1122037 4.2459839 0.0000000 Unknow CSMD1.VAR1 - SLC26A3 0.0000039 0.0000003 0
SUN1 0.1071429 1.0896234 4.0818164 0.0000001 Unknow CSMD1.VAR1 - SLC26A3 0.0000391 0.0000023 0
HERC1 0.1428571 1.0456357 3.5619537 0.0000001 Unknow CSMD1.VAR1 - SLC26A3 0.0000227 0.0000015 0
TSPAN5 0.1071429 1.0430028 3.8801959 0.0000006 Unknow CSMD1.VAR1 - SLC26A3 0.0002608 0.0000109 0
ENSG00000223393 0.7500000 1.0199034 1.4040158 0.0000006 Unknow CSMD1.VAR1 - SLC26A3 0.0002588 0.0000109 0
ST18.var1 0.1071429 1.0185599 3.8328069 0.0000006 Unknow CSMD1.VAR1 - SLC26A3 0.0002548 0.0000109 0
AFF1 0.2500000 1.0180551 2.7060883 0.0000001 Unknow CSMD1.VAR1 - SLC26A3 0.0000444 0.0000025 0
FNDC3A 0.1428571 0.9926448 3.4690631 0.0000001 Unknow CSMD1.VAR1 - SLC26A3 0.0000252 0.0000016 0
CACNB2 0.1428571 0.9659407 3.3119173 0.0000006 Unknow CSMD1.VAR1 - SLC26A3 0.0002540 0.0000109 0
SENP2 0.1428571 0.9584534 3.3496912 0.0000002 Unknow CSMD1.VAR1 - SLC26A3 0.0000930 0.0000049 0
ELOB 0.2142857 0.9477540 2.7630658 0.0000003 Unknow CSMD1.VAR1 - SLC26A3 0.0001288 0.0000064 0
EPS15 0.1428571 0.9455069 3.2210052 0.0000016 Unknow CSMD1.VAR1 - SLC26A3 0.0007022 0.0000242 0
PTMA 1.0000000 1.5862539 1.6386241 0.0000000 Unknow IGF2R - PTMA 0.0000000 0.0000000 1
A2MP1 0.1600000 0.5811341 1.9658411 0.0001959 Unknow IGF2R - PTMA 0.0088156 0.0044078 1
H3-3A 0.1800000 0.5225175 1.6721245 0.0006295 Unknow IGF2R - PTMA 0.0283255 0.0094418 1
ATP5PF 0.2000000 0.4142681 1.2509110 0.0062833 Unknow IGF2R - PTMA 0.2827503 0.0706876 1
COX7A2 0.1600000 0.3775410 1.2722115 0.0137864 Unknow IGF2R - PTMA 0.6203887 0.1240777 1
HNRNPH3 0.1200000 0.3013211 1.1997713 0.0480135 Unknow IGF2R - PTMA 1.0000000 0.2689884 1
RPS25 0.2600000 0.2873313 0.7279532 0.0441184 Unknow IGF2R - PTMA 1.0000000 0.2689884 1
RPL13 1.0000000 1.6832000 1.7559596 0.0000000 Unknow IGF2R - RPL13 0.0000000 0.0000000 1
RPL13P12 0.4857143 0.9821821 1.7176424 0.0000000 Unknow IGF2R - RPL13 0.0000008 0.0000004 1
PDCL3 0.1142857 0.7827423 2.9958403 0.0000284 Unknow IGF2R - RPL13 0.0020136 0.0006712 1
CEP57 0.1142857 0.7300022 2.7987618 0.0001089 Unknow IGF2R - RPL13 0.0077330 0.0019332 1
PSMB4 0.1714286 0.6020433 1.8869835 0.0016578 Unknow IGF2R - RPL13 0.1177031 0.0235406 1
NDUFA13 0.1142857 0.5374300 2.0723194 0.0058542 Unknow IGF2R - RPL13 0.4156501 0.0519563 1
LINC01609 0.2000000 0.5192197 1.5285514 0.0043957 Unknow IGF2R - RPL13 0.3120973 0.0513388 1
CCDC186 0.1714286 0.5180413 1.6600712 0.0050616 Unknow IGF2R - RPL13 0.3593717 0.0513388 1
CBX1 0.1428571 0.5179696 1.7985033 0.0070126 Unknow IGF2R - RPL13 0.4978981 0.0553220 1
EIF5B 0.1428571 0.4314145 1.5607087 0.0156824 Unknow IGF2R - RPL13 1.0000000 0.1113448 1
RPL7P9 0.1714286 0.3645991 1.1736489 0.0488968 Unknow IGF2R - RPL13 1.0000000 0.2935140 1
CALR 0.1428571 0.3513646 1.2696930 0.0496080 Unknow IGF2R - RPL13 1.0000000 0.2935140 1
RPL13A 1.0000000 1.6154274 1.6821229 0.0000000 Unknow IGF2R - RPL13A 0.0000000 0.0000000 1
RPL13AP5 0.7187500 1.5455270 2.1433798 0.0000000 Unknow IGF2R - RPL13A 0.0000000 0.0000000 1
TCEAL4 0.1250000 0.5953745 2.2090535 0.0022646 Unknow IGF2R - RPL13A 0.1902243 0.0311724 1
RPL13AP25 0.1562500 0.5899795 1.9505908 0.0025977 Unknow IGF2R - RPL13A 0.2182066 0.0311724 1
RPL23A 0.3750000 0.5877784 1.2199211 0.0009132 Unknow IGF2R - RPL13A 0.0767048 0.0191762 1
PITPNC1 0.1250000 0.5617724 2.1338765 0.0024978 Unknow IGF2R - RPL13A 0.2098141 0.0311724 1
MGST3 0.1250000 0.5289527 1.9988049 0.0057336 Unknow IGF2R - RPL13A 0.4816220 0.0602028 1
SUZ12 0.9062500 0.5270453 0.4267139 0.0001402 Unknow IGF2R - RPL13A 0.0117765 0.0039255 1
ZNF385D.var1 0.1250000 0.5193669 1.9373940 0.0082159 Unknow IGF2R - RPL13A 0.6901361 0.0766818 1
RPS27AP16 0.2187500 0.4744318 1.3300082 0.0112454 Unknow IGF2R - RPL13A 0.9446167 0.0944617 1
MAN1A2 0.1250000 0.4602401 1.7627536 0.0137478 Unknow IGF2R - RPL13A 1.0000000 0.1005895 1
EIF3A 0.1562500 0.4593419 1.5712649 0.0143699 Unknow IGF2R - RPL13A 1.0000000 0.1005895 1
CALM2 0.2500000 0.4425400 1.1659254 0.0163338 Unknow IGF2R - RPL13A 1.0000000 0.1055415 1
ITGB1 0.1250000 0.3876749 1.4852799 0.0425887 Unknow IGF2R - RPL13A 1.0000000 0.2384969 1
ZFPM2 0.4062500 0.3014333 0.5589164 0.0420306 Unknow IGF2R - RPL13A 1.0000000 0.2384969 1
RPLP1 1.0000000 1.5702064 1.6327145 0.0000000 Unknow IGF2R - RPLP1 0.0000000 0.0000000 1
UBL5 0.1904762 0.7041183 2.1172695 0.0000480 Unknow IGF2R - RPLP1 0.0038404 0.0019202 1
EID1 0.1428571 0.5651394 2.0020301 0.0009487 Unknow IGF2R - RPLP1 0.0758957 0.0189739 1
PARK7 0.1666667 0.5459368 1.8218837 0.0009305 Unknow IGF2R - RPLP1 0.0744431 0.0189739 1
RANBP1 0.1190476 0.5393148 2.1072964 0.0016357 Unknow IGF2R - RPLP1 0.1308595 0.0261719 1
ENSG00000242299 0.1904762 0.4685385 1.4407680 0.0045134 Unknow IGF2R - RPLP1 0.3610711 0.0601785 1
ENSG00000226532 0.1666667 0.4339324 1.4239290 0.0092719 Unknow IGF2R - RPLP1 0.7417526 0.0927191 1
RSRC2 0.1190476 0.4206161 1.6606253 0.0118875 Unknow IGF2R - RPLP1 0.9509993 0.1056666 1
RPL21P28 0.1190476 0.4008269 1.5783183 0.0176680 Unknow IGF2R - RPLP1 1.0000000 0.1413437 1
RPL12 0.3095238 0.3993787 0.9119374 0.0086666 Unknow IGF2R - RPLP1 0.6933242 0.0927191 1
ENSG00000279465 0.1666667 0.3315339 1.0960541 0.0456653 Unknow IGF2R - RPLP1 1.0000000 0.2889264 1
RPS16 0.3571429 0.3173135 0.6505979 0.0222875 Unknow IGF2R - RPLP1 1.0000000 0.1620907 1
HSP90AB1 0.3095238 0.3084517 0.7120171 0.0492496 Unknow IGF2R - RPLP1 1.0000000 0.2889264 1
RPS18 1.0000000 1.8773699 1.9919317 0.0000000 Unknow IGF2R - RPS18 0.0000000 0.0000000 1
ENSG00000213315 0.3125000 1.0476710 2.3813209 0.0000000 Unknow IGF2R - RPS18 0.0000022 0.0000011 1
ENSG00000242299 0.3125000 1.0117517 2.2822331 0.0000002 Unknow IGF2R - RPS18 0.0000116 0.0000039 1
CCT5 0.1250000 0.7716845 2.7776902 0.0001261 Unknow IGF2R - RPS18 0.0086985 0.0021746 1
ANAPC11 0.1250000 0.5091208 1.9132510 0.0085521 Unknow IGF2R - RPS18 0.5900933 0.1015056 1
C4orf3 0.1562500 0.4561244 1.5309319 0.0176509 Unknow IGF2R - RPS18 1.0000000 0.1310361 1
RSL1D1 0.1562500 0.4472610 1.5027053 0.0208898 Unknow IGF2R - RPS18 1.0000000 0.1310361 1
NGLY1 0.1250000 0.4329545 1.6226064 0.0283777 Unknow IGF2R - RPS18 1.0000000 0.1631718 1
ENSG00000227615 0.2187500 0.4309848 1.1984658 0.0198148 Unknow IGF2R - RPS18 1.0000000 0.1310361 1
MT-ATP8 0.2187500 0.4291174 1.2161277 0.0177482 Unknow IGF2R - RPS18 1.0000000 0.1310361 1
PABPC1 0.4062500 0.4258329 0.8136143 0.0088266 Unknow IGF2R - RPS18 0.6090334 0.1015056 1
MARCKS 0.1250000 0.4053817 1.5164516 0.0426029 Unknow IGF2R - RPS18 1.0000000 0.2261232 1
ENSG00000226532 0.1562500 0.3815097 1.2879645 0.0459864 Unknow IGF2R - RPS18 1.0000000 0.2266475 1
RPS12 0.4375000 0.3233617 0.5672493 0.0130554 Unknow IGF2R - RPS18 0.9008193 0.1286885 1
SLC26A3 1.0000000 1.7978314 1.8922475 0.0000000 Unknow IGF2R - SLC26A3 0.0000000 0.0000000 1
RPL5P34 0.1111111 0.7633924 2.8810101 0.0003881 Unknow IGF2R - SLC26A3 0.0279466 0.0114351 1
MLLT11 0.1481481 0.7433006 2.4743456 0.0004765 Unknow IGF2R - SLC26A3 0.0343053 0.0114351 1
VIM 0.2592593 0.6803760 1.7339930 0.0007709 Unknow IGF2R - SLC26A3 0.0555019 0.0138755 1
ATP5MC1 0.1111111 0.6204456 2.4038515 0.0036103 Unknow IGF2R - SLC26A3 0.2599448 0.0519890 1
NTAQ1 0.1111111 0.5866985 2.2729494 0.0067428 Unknow IGF2R - SLC26A3 0.4854782 0.0538564 1
DNAJC10 0.1111111 0.5858770 2.2699168 0.0066263 Unknow IGF2R - SLC26A3 0.4770949 0.0538564 1
TMEM258 0.1481481 0.5849388 1.9704876 0.0061649 Unknow IGF2R - SLC26A3 0.4438757 0.0538564 1
NEDD8 0.1111111 0.5750215 2.2171209 0.0082281 Unknow IGF2R - SLC26A3 0.5924204 0.0538564 1
SNX6 0.1481481 0.5359310 1.8101716 0.0119276 Unknow IGF2R - SLC26A3 0.8587855 0.0646866 1
RANBP1 0.1111111 0.5192151 2.0008722 0.0194343 Unknow IGF2R - SLC26A3 1.0000000 0.0932847 1
PNN 0.1851852 0.5172080 1.5692771 0.0125779 Unknow IGF2R - SLC26A3 0.9056121 0.0646866 1
H2AZ1 0.2222222 0.5073501 1.4161872 0.0115402 Unknow IGF2R - SLC26A3 0.8308964 0.0646866 1
ASIP 0.4074074 0.4782103 0.9184858 0.0067207 Unknow IGF2R - SLC26A3 0.4838935 0.0538564 1
SUCO 0.1111111 0.4331620 1.7521216 0.0329714 Unknow IGF2R - SLC26A3 1.0000000 0.1483713 1
MTATP6P1 0.2592593 0.3853874 0.9673395 0.0454117 Unknow IGF2R - SLC26A3 1.0000000 0.1816467 1
SLBP 0.7777778 0.2674739 0.2393811 0.0075257 Unknow IGF2R - SLC26A3 0.5418507 0.0538564 1
MT-RNR2 0.7037037 0.1557825 0.1493686 0.0359626 Unknow IGF2R - SLC26A3 1.0000000 0.1523121 1


8.4 Heatmap of cell subtypes - log(CPM + 1)

8.5 Heatmap of cell subtypes - scale(log(CPM + 1))




9 Disclaimer

The analysis was performed through the non-profit and open-source pipeline JSEQ_scRNAseq. Remember, in silico analysis must be validated in vitro or in vivo. For more information, visit GitHub or contact us. JSEQ_scRNAseq was created at the Institute of Bioorganic Chemistry, Polish Academy of Sciences.